PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041618
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 365aa    MW: 40369.6 Da    PI: 9.3582
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041618genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.4e-163695155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GV++++++gr++A+++d  s+n    k+ ++++lg ++ +e Aa a++ a++k++g
  Lus10041618 36 SVYRGVTRHRWTGRYEAHLWDkNSWNDsqnKKgRQVYLGAYDEEEAAAHAYDLAALKYWG 95
                 78*******************888855566446*************************98 PP

2AP251.23.1e-16138189155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Lus10041618 138 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 189
                  89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-1736105IPR016177DNA-binding domain
PfamPF008475.1E-133695IPR001471AP2/ERF domain
PROSITE profilePS5103219.99437103IPR001471AP2/ERF domain
SMARTSM003802.1E-2537109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-1737104IPR001471AP2/ERF domain
PRINTSPR003674.2E-63849IPR001471AP2/ERF domain
CDDcd000181.69E-23138199No hitNo description
SuperFamilySSF541711.05E-17138199IPR016177DNA-binding domain
PfamPF008475.8E-12138189IPR001471AP2/ERF domain
SMARTSM003804.3E-24139203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17139198IPR001471AP2/ERF domain
PROSITE profilePS5103218.334139197IPR001471AP2/ERF domain
PRINTSPR003674.2E-6179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAKMSKKTKG SEISNKSSGK RTRKSVPRDS PPKRSSVYRG VTRHRWTGRY EAHLWDKNSW  60
NDSQNKKGRQ VYLGAYDEEE AAAHAYDLAA LKYWGPHTIL NFPLETYDKE TMEMEGQSKE  120
EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY  180
DMAAIEYRGL NAVTNFDLSR YIHSLRPNGT QTPSTSNGDP TTPLVDEDIH SPFQDAVVVN  240
HLAAASPSPT HFFNHTASPA GSTTPSGIIS GSSGGSPSSS STTSALGLLL QSSKFKEMLE  300
RTSRSTATTT DSRPSTPAPE VSDHRLPRRS FPEDIQTYFG FGEEILLGNL NDYVSPIFHC  360
DLDG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020562.11e-155PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN41e-100AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2Q6I21e-152A0A0D2Q6I2_G
STRINGPOPTR_0003s18350.11e-149(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-91AP2 family protein